INCIDE

Publications

2016

Stem cell microscopic image segmentation using supervised normalized cuts
X. Huang, C. Li, M. Shen, K. Shirahama, J. Nyffeler, M. Leist, M. Grzegorzek, O. Deussen
Stem cell microscopic image segmentation using supervised normalized cuts
IEEE International Conference on Image Processing (2016), P. 4140-4144
Web BibTeX Doi Paper (.pdf, 1.4 MB)
Single-Image Insect Pose Estimation by Graph Based Geometric Models and Random Forests
M. Shen, L. Duan, O. Deussen
Single-Image Insect Pose Estimation by Graph Based Geometric Models and Random Forests
Computer Vision -- ECCV 2016 Workshops, Springer International Publishing (2016), P. 217-230
Web BibTeX Doi Paper (.pdf, 2.9 MB)

2015

Interactive Tracking of Insect Posture
M. Shen, C. Li, W. Huang, P. Szyszka, K. Shirahama, M. Grzegorzek, D. Merhof, O. Deussen
Interactive Tracking of Insect Posture
Pattern Recognition 48.11 (2015), P. 3560-3571
Web BibTeX Doi Paper (.pdf, 4.3 MB)
Automated tracking and analysis of behavior in restrained insects
M. Shen, P. Szyszka, O. Deussen, C. Galizia, D. Merhof
Automated tracking and analysis of behavior in restrained insects
Journal of Neuroscience Methods 239.Supplement C (2015), P. 194 - 205
Web BibTeX Doi Paper (.pdf, 3.2 MB)

2014

Interactive Framework for Insect Tracking with Active Learning
M. Shen, W. Huang, P. Szyszka, C. Galizia, D. Merhof
Interactive Framework for Insect Tracking with Active Learning
22nd International Conference on Pattern Recognition (2014), P. 2733-2738
Web BibTeX Doi Paper (.pdf, 633.3 KB)
Transition Metal Precipitates in Mc Si: A New Detection Method Using 3D-FIB
G. Hahn, A. Zuschlag, M. Schwab, D. Merhof
Transition Metal Precipitates in Mc Si: A New Detection Method Using 3D-FIB
Gettering and Defect Engineering in Semiconductor Technology XV 205 (2014), P. 136-141
Web BibTeX Doi Paper (.pdf, 595.1 KB)

2013

Automated Image Processing to Quantify Cell Migration
M. Shen, B. Zimmer, M. Leist, D. Merhof
Automated Image Processing to Quantify Cell Migration
Bildverarbeitung für die Medizin 2013: Algorithmen - Systeme - Anwendungen. Proceedings des Workshops vom 3. bis 5. März 2013 in Heidelberg, Springer Berlin Heidelberg (2013), P. 152-157
Web BibTeX Doi Paper (.pdf, 3.2 MB)
The looks of an odour -- visualising neural odour response patterns in real time
M. Strauch, C. Muthing, M. Broeg, P. Szyszka, D. Munch, T. Laudes, O. Deussen, C. Galizia, D. Merhof
The looks of an odour - visualising neural odour response patterns in real time
BMC Bioinformatics 14.Suppl 19 (2013), P. S6
Web BibTeX Doi Paper (.pdf, 2.1 MB)
Automatic framework for tracking honeybeeś antennae and mouthparts from low framerate video
M. Shen, P. Szyszka, C. Galizia, D. Merhof
Automatic framework for tracking honeybeeś antennae and mouthparts from low framerate video
IEEE International Conference on Image Processing (2013), P. 4112-4116
Web BibTeX Doi Paper (.pdf, 1.8 MB)
Evaluation of a human neurite growth assay as specific screen for developmental neurotoxicants
A. Krug, N. Balmer, F. Matt, F. Sch{\"o}nenberger, D. Merhof, M. Leist
Evaluation of a human neurite growth assay as specific screen for developmental neurotoxicants
Archives of Toxicology 87.12 (2013), P. 2215-2231
Web BibTeX Doi Paper (.pdf, 537.1 KB)
Intracellular tracking of single-plasmid DNA particles after delivery by electroporation
C. Rosazza, A. Buntz, T. Riess, D. Woll, A. Zumbusch, M. Rols
Intracellular tracking of single-plasmid DNA particles after delivery by electroporation
Molecular Therapy 21.12 (2013), P. 2217-2226
Web BibTeX Doi Paper (.pdf, 956.8 KB)

2012

HiTSEE KNIME: a visualization tool for hit selection and analysis in high-throughput screening experiments for the KNIME platform
H. Strobelt, E. Bertini, J. Braun, O. Deussen, U. Groth, T. Mayer, D. Merhof
HiTSEE KNIME: a visualization tool for hit selection and analysis in high-throughput screening experiments for the KNIME platform
BMC Bioinformatics 13 Suppl 8 (2012), P. S4
Web BibTeX Doi Paper (.pdf, 2.1 MB)
An advanced image processing approach based on parallel growth and overlap handling to quantify neutrite growth
F. Schönenberger, A. Krug, M. Leist, E. May, D. Merhof
An advanced image processing approach based on parallel growth and overlap handling to quantify neutrite growth
Ninth International Workshop on Computational Systems Biology 61 (2012), P. 87-90
Web BibTeX Paper (.pdf, 744.3 KB)
Image Analysis of Nuclear Envelope Breakdown Events using KNIME
T. Rieß, J. Marino, C. Wandke, D. Merhof, O. Deussen, G. Csucs, U. Kutay, P. Horvath
Image Analysis of Nuclear Envelope Breakdown Events using KNIME
Ninth International Workshop on Computational Systems Biology 61 (2012), P. 67-70
Web BibTeX Paper (.pdf, 478.2 KB)
INCIDE the brain of a bee: Visualising honeybee brain activity in real time by semantic segmentation
M. Strauch, M. Broeg, C. Müthing, P. Szyszka, O. Deussen, C. Galizia, D. Merhof
INCIDE the brain of a bee: Visualising honeybee brain activity in real time by semantic segmentation
IEEE Symposium on Biological Data Visualization (2012), P. 17-24
Web BibTeX Doi Paper (.pdf, 4.1 MB)

2011

Automated Image Processing for the Analysis of DNA Repair Dynamics
T. Riess, C. Dietz, M. Tomas, E. Ferrando{-}May, D. Merhof
Automated Image Processing for the Analysis of DNA Repair Dynamics
CoRR abs/1101.3391 (2011)
Web BibTeX Paper (.pdf, 2.0 MB)
A versatile framework for the analysis of high-throughput screening data
J. Hamecher, T. Rieß, E. Bertini, K. Kozak, J. Kastl, T. Mayer, D. Merhof
A versatile framework for the analysis of high-throughput screening data
Eighth International Workshop on Computational Systems Biology 57 (2011), P. 57-60
Web BibTeX Paper (.pdf, 1.2 MB)
Automated image processing to quantify neurite growth in Luhmes human neuronal precursor cells
D. Merhof, F. Schönenberger, N. Stiegler, A. Krug, T. Rieß, C. Karreman, M. Leist, E. May
Automated image processing to quantify neurite growth in Luhmes human neuronal precursor cells
Eighth International Workshop on Computational Systems Biology 57 (2011), P. 133-136
Web BibTeX Paper (.pdf, 633.4 KB)
Automated quantification of histone relocation in cell nuclei
T. Rieß, C. Dietz, M. Horn, O. Deussen, M. Leist, T. Waldmann, D. Merhof
Automated quantification of histone relocation in cell nuclei
Computational vision and medical image processing : VipImage 2011 (2011), P. 423-428
Web BibTeX Doi
HiTSEE : a visualization tool for hit selection and analysis in high-throughput screening experiments
E. Bertini, H. Strobelt, J. Braun, O. Deussen, U. Groth, T. Mayer, D. Merhof
HiTSEE : a visualization tool for hit selection and analysis in high-throughput screening experiments
IEEE Symposium on Biological Data Visualization (2011), P. 95-102
Web BibTeX Doi Paper (.pdf, 2.1 MB)

2010

A dual function for chaperones SSBtextendashRAC and the NAC nascent polypeptidetextendashassociated complex on ribosomes
A. Koplin, S. Preissler, Y. Ilina, M. Koch, A. Scior, M. Erhardt, E. Deuerling
A dual function for chaperones SSBtextendashRAC and the NAC nascent polypeptidetextendashassociated complex on ribosomes
The Journal of Cell Biology 189.1 (2010), P. 57-68
Web BibTeX Doi Paper (.pdf, 2.9 MB)